import cv2
import numpy as np
from matplotlib import pyplot as plt

img = cv2.imread('/data/cvdata/gradient.png',0)
ret,thresh1 = cv2.threshold(img,127,255,cv2.THRESH_BINARY)
ret,thresh2 = cv2.threshold(img,127,255,cv2.THRESH_BINARY_INV)
ret,thresh3 = cv2.threshold(img,127,255,cv2.THRESH_TRUNC)
ret,thresh4 = cv2.threshold(img,127,255,cv2.THRESH_TOZERO)
ret,thresh5 = cv2.threshold(img,127,255,cv2.THRESH_TOZERO_INV)

titles = ['Original Image','BINARY','BINARY_INV','TRUNC','TOZERO','TOZERO_INV']
images = [img, thresh1, thresh2, thresh3, thresh4, thresh5]

for i in range(6):
    plt.subplot(2,3,i+1),plt.imshow(images[i],'gray')
    plt.title(titles[i])
    plt.xticks([]),plt.yticks([])

plt.show()

%matplotlib inline 

import cv2
import numpy as np
from matplotlib import pyplot as plt

img = cv2.imread('/data/cvdata/dave.jpg',0)
# img = cv2.imread('/data/cvdata/apple.jpg', 0)
img = cv2.medianBlur(img,5)

ret,th1 = cv2.threshold(img,127,255,cv2.THRESH_BINARY)
th2 = cv2.adaptiveThreshold(img,255,cv2.ADAPTIVE_THRESH_MEAN_C,\
            cv2.THRESH_BINARY,11,2)
th3 = cv2.adaptiveThreshold(img,255,cv2.ADAPTIVE_THRESH_GAUSSIAN_C,\
            cv2.THRESH_BINARY,11,2)

titles = ['Original Image', 'Global Thresholding (v = 127)', 
            'Adaptive Mean Thresholding', 'Adaptive Gaussian Thresholding']
images = [img, th1, th2, th3]

for i in range(4):
    plt.subplot(2,2,i+1),plt.imshow(images[i],'gray')
    plt.title(titles[i])
    plt.xticks([]),plt.yticks([])
plt.show()

import cv2
import numpy as np
from matplotlib import pyplot as plt

img = cv2.imread('/data/cvdata/noisy2.png',0)

# img = cv2.imread('/data/cvdata/apple.jpg',0)

# global thresholding
ret1,th1 = cv2.threshold(img,127,255,cv2.THRESH_BINARY)

# Otsu's thresholding
ret2,th2 = cv2.threshold(img,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)

# Otsu's thresholding after Gaussian filtering
blur = cv2.GaussianBlur(img,(5,5),0)
ret3,th3 = cv2.threshold(blur,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)

# plot all the images and their histograms
images = [img, 0, th1,
          img, 0, th2,
          blur, 0, th3]
titles = ['Original Noisy Image','Histogram','Global Thresholding (v=127)',
          'Original Noisy Image','Histogram',"Otsu's Thresholding",
          'Gaussian filtered Image','Histogram',"Otsu's Thresholding"]

for i in range(3):
    plt.subplot(3,3,i*3+1),plt.imshow(images[i*3],'gray')
    plt.title(titles[i*3]), plt.xticks([]), plt.yticks([])
    plt.subplot(3,3,i*3+2),plt.hist(images[i*3].ravel(),256)
    plt.title(titles[i*3+1]), plt.xticks([]), plt.yticks([])
    plt.subplot(3,3,i*3+3),plt.imshow(images[i*3+2],'gray')
    plt.title(titles[i*3+2]), plt.xticks([]), plt.yticks([])
plt.show()

img = cv2.imread('/data/cvdata/noisy2.png',0)
blur = cv2.GaussianBlur(img,(5,5),0)

# find normalized_histogram, and its cumulative distribution function
hist = cv2.calcHist([blur],[0],None,[256],[0,256])
hist_norm = hist.ravel()/hist.max()
Q = hist_norm.cumsum()

bins = np.arange(256)

fn_min = np.inf
thresh = -1

for i in range(1,256):
    p1,p2 = np.hsplit(hist_norm,[i]) # probabilities
    q1,q2 = Q[i],Q[255]-Q[i] # cum sum of classes
    b1,b2 = np.hsplit(bins,[i]) # weights

    # finding means and variances
    m1,m2 = np.sum(p1*b1)/q1, np.sum(p2*b2)/q2
    v1,v2 = np.sum(((b1-m1)**2)*p1)/q1,np.sum(((b2-m2)**2)*p2)/q2

    # calculates the minimization function
    fn = v1*q1 + v2*q2
    if fn < fn_min:
        fn_min = fn
        thresh = i

# find otsu's threshold value with OpenCV function
ret, otsu = cv2.threshold(blur,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
print (thresh,ret)